All of the software listed below is available (usually in the form of public R language packages) at the URLs specified. Dates indicate release dates of the software, with multiple years indicating multiple released versions. in this page you can also find data used in our publications.

Software:

• PerfMeas 1.1 (2011-2012): CRAN link
  This package implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
  
  
• NetPreProc 1.0 (2012): CRAN link
  This package inplements many preprocessing techniques suitable for network-structured data. Some of the pre processing methods implemented in NetPreProc are taken from the literature while other have been developed and tested in our published experiments.

Web servers:

• CSTgrid (2007): CSTgrid is a tool for searching Conserved Sequence Tags (CSTs) through cross-species genome comparisons, deployed on a Grid System Architecture, based on Web Services concepts and technologies. The system can be used through a web interface, showing the results in a very intuitive graphical interface, giving the user the opportunity to explore them with a point-and-click approach.
  

Data:

• Bionetdata 1.0 (2012): CRAN link
  Data Package that includes several examples of chemical and biological data networks. It contains, among the other, drugs-drugs chemical similarity networks, proteins-proteins interactions (PPI) networks and proteins networks constructed cosindering the shared protein domains between proteins. In this package you can also find labels matrices containing functional annotations for genes/gene-products taken from the MIPS Functional Catalogue (FunCAT) and for drugs (from DrugBank 3.0).