Software download and documentation

HCGene needs a proper installation of the R environment on your computer. See the R project web site http://www.r-project.org to install the R environment.

The last version of the HCGene R source package is downloadable from:
http://homes.dsi.unimi.it/valenti/SW/hcgene/download/hcgene_1.0.1.tar.gz

To install the package on a unix/linux R environment, login as root and type from your shell prompt:
> R CMD INSTALL hcgene_1.0.1.tar.gz

This automatically installs the code and the HTML/pdf documentation. Note that HCGene requires the installation of several Bioconductor R packages: GO, GOstats, graph, Rgraphviz. In particular, the installation of the Bioconductor package Rgraphviz requires the installation of the library graphviz: http://www.graphviz.org

The HCGene reference manual in pdf format included in the package may be also downloaded from http://homes.dsi.unimi.it/valenti/SW/hcgene/doc/hcgene-manual.pdf